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O’Neill’s investigators were billeted three or four to a room in an Aden hotel. “Forty-five FBI personnel slept on mats on the ball-room floor,” he later reported. He set up a command post on the eighth floor, which was surrounded by sandbags and protected by a company of fifty marines.

O’Neill spent much of his time coaxing the Yemeni authorities to cooperate. To build a case that would hold up in American courts, he wanted his agents present during interrogations by local authorities, in part to ensure that none of the suspects were tortured. He also wanted to gather eyewitness testimony from residents who had seen the explosion. Both the Yemeni authorities and Bodine resisted these requests. “You want a bunch of six-foot-two Irish-Americans to go door-to-door?” Bodine remembers saying to O’Neill. “And, excuse me, but how many of your guys speak Arabic?”

There were only half a dozen Arabic speakers in the FBI contingent, and even O’Neill acknowledged that their competence was sometimes in question. On one occasion, he complained to a Yemeni intelligence officer, “Getting information out of you is like pulling teeth.” When his comment was translated, the Yemeni’s eyes widened. The translator had told him, “If you don’t give me the information I want, I’m going to pull out your teeth.”

When O’Neill expressed his frustration to Washington, President Clinton sent a note to President Ali Abdullah Saleh. It had little effect. According to agents on the scene, O’Neill’s people were never given the authority they needed for a proper investigation. Much of their time was spent on board the Cole, interviewing sailors, or lounging around the sweltering hotel. Some of O’Neill’s requests for evidence mystified the Yemenis. They couldn’t understand, for instance, why he was demanding a hat worn by one of the conspirators, which O’Neill wanted to examine for DNA evidence. Even the harbor sludge, which contained residue from the bomb, was off limits until the bureau paid the Yemeni government a million dollars to dredge it.

There were so many perceived threats that the agents often slept in their clothes and with their guns at their sides. Bodine thought that much of this fear was overblown. “They were deeply suspicious of everyone, including the hotel staff,” she told me. She assured O’Neill that gunfire outside the hotel was probably not directed at the investigators but was simply the noise of wedding celebrations. Still, she added that, for the investigators’ own safety, she wanted to lower the bureau’s profile by reducing the number of agents and stripping them of heavy weapons. Upon receiving a bomb threat, the investigators evacuated the hotel and moved to an American vessel, the USS Duluth. After that, they had to request permission just to come ashore.

Relations between Bodine and O’Neill deteriorated to the point that Barry Mawn flew to Yemen to assess the situation. “She represented that John was insulting, and not getting along well with the Yemenis,” he recalled. Mawn talked to members of the FBI team and American military officers, and he observed O’Neill’s interactions with Yemeni authorities. He told O’Neill that he was doing “an outstanding job.” On Mawn’s return, he reported favorably on O’Neill to Freeh, adding that Bodine was his “only detractor.”

An ambassador, however, has authority over which Americans are allowed to stay in a foreign country. A month after the investigation began, Assistant Director Dale Watson told The Washington Post, “Sustained cooperation” with the Yemenis “has enabled the FBI to further reduce its in-country presence… The FBI will soon be able to bring home the FBI’s senior on-scene commander, John O’Neill.” It appeared to be a very public surrender. The same day, the Yemeni prime minister told the Post that no link had been discovered between the Cole bombers and Al Qaeda.

The statement was premature, to say the least. In fact, it is possible that some of the planning for the Cole bombing and the September 11 attacks took place simultaneously. It is now believed that at least two of the suspected conspirators in the Cole bombing had attended a meeting of alleged bin Laden associates in Malaysia, in January 2000. Under CIA pressure, Malaysian authorities had conducted a surveillance of the gathering, turning up a number of faces but, in the absence of wiretaps, nothing of what was said. “It didn’t seem like much at the time,” a Clinton administration official told me. “None of the faces showed up in our own files.” Early last year, the FBI targeted the men who were present at the Malaysia meeting as potential terrorists. Two of them were subsequently identified as hijackers in the September 11 attacks.

After two months in Yemen, O’Neill came home feeling that he was fighting the counterterrorism battle without support from his own government. He had made some progress in gaining access to evidence, but so far the investigation had been a failure. Concerned about continuing threats against the remaining FBI investigators, he tried to return in January of 2001. Bodine denied his application to reenter the country. She refuses to discuss that decision. “Too much is being made of John O’Neill’s being in Yemen or not,” she told me. “John O’Neill did not discover Al Qaeda. He did not discover Osama bin Laden. So the idea that John or his people or the FBI were somehow barred from doing their job is insulting to the U.S. government, which was working on Al Qaeda before John ever showed up. This is all my embassy did for ten months. The fact that not every single thing John O’Neill asked for was appropriate or possible does not mean that we did not support the investigation.”

After O’Neill’s departure, the remaining agents, feeling increasingly vulnerable, retreated to the American embassy in Sanaa, the capital of Yemen. In June, the Yemeni authorities arrested eight men who they said were part of a plot to blow up the embassy. New threats against the FBI followed, and Freeh, acting upon O’Neill’s recommendation, withdrew the team entirely. Its members were, he told me, “the highest target during this period.” Bodine calls the pullout “unconscionable.” In her opinion, there was never a specific, credible threat against the bureau. The American embassy, Bodine points out, stayed open. But within days American military forces in the Middle East were put on top alert.

Few people in the bureau knew that O’Neill had a wife and two children (John, Jr., and his younger sister, Carol) in New Jersey, who did not join him when he moved to Chicago, in 1991. In his New York office, the most prominent pictures were not family photographs but French Impressionist prints. On his coffee table was a book about tulips, and his office was always filled with flowers. He was a terrific dancer, and he boasted that he had been on American Bandstand when he was a teenager. Some women found him irresistibly sexy. Others thought him a cad.

Shortly after he arrived in Chicago, O’Neill met Valerie James, a fashion sales director, who was divorced and was raising two children. Four years later, when he transferred to headquarters, in Washington, he also began seeing Anna DiBattista, who worked for a travel agency. Then, when he moved to New York, Valerie James joined him. In 1999, DiBattista moved to New York to take a new job, complicating his life considerably. His friends in Chicago and New York knew Valerie, and his friends in Washington knew Anna. If his friends happened to see him in the company of the “wrong” woman, he pledged them to secrecy.