If genetic distances between species accumulated at a uniform rate with time, they would function as a smoothly ticking clock. All that would be required to convert genetic distance into absolute time since the last common ancestor would be a calibration, furnished by a pair of species for which we know both the genetic distance and the time of divergence as dated independently by fossils. In fact, two independent calibrations are available for higher primates. On the one hand, monkeys diverged from apes between twenty-five and thirty million years ago according to fossil evidence, and now differ in about 7.3 % of their DNA. On the other hand, orangutans diverged from chimps and gorillas between twelve and sixteen million years ago and now differ in about 3.6 % of their DNA. Comparing these two examples, a doubling of evolutionary time, as one \ goes from twelve or sixteen to twenty-five or thirty million years, leads to a doubling of genetic distance (3.6 to 7.3 % of DNA). Thus, the DNA clock has ticked relatively steadily among higher primates.
With those calibrations, Sibley and Ahlquist estimated the following time scale for our evolution. Since our own genetic distance from chimps (1.6 %) is about half the distance of orangutans from chimps (3.6 %), we must have been going our separate way for about half of the twelve to sixteen million years that orangutans had to accumulate their genetic distinction from chimps. That is, the human and 'other chimp' evolutionary lines diverged around six to eight million years ago. By the same reasoning, gorillas parted from the common ancestor of us three chimpanzees around nine million years ago, and the pygmy and common chimps diverged around three million years ago. In contrast, when I took physical anthropology as a college freshman in 1954, the assigned textbooks said that humans diverged from apes fifteen to thirty million years ago. Thus, the DNA clock strongly supports a controversial conclusion also drawn from several other molecular clocks based on amino acid sequences of proteins, mitochondrial DNA, and globin pseudogene DNA. Each clock indicates that humans have had only a short history as a species distinct from other apes, much shorter than paleontologists used to assume.
What do these results imply about our position in the animal kingdom? Biologists classify living things in hierarchical categories, each less distinct than the next: subspecies, species, genus, family, superfamily, order, class, and phylum. The Encyclopaedia Britannica and all the biology texts on my shelf say that humans and apes belong to the same order, called Primates, and the same superfamily, called Hominoidea, but to separate families, called Hominidae and Pongidae. Whether Sibley's and Ahlquist's work changes this classification depends on one's philosophy of taxonomy. Traditional taxonomists group species into higher categories by making somewhat subjective evaluations of how important the differences between species are. Such taxonomists place humans in a separate family because of distinctive functional traits like large brain and bipedal posture, and this classification would remain unaffected by measures of genetic distance.
However, — another school of taxonomy, called cladistics, argues that classification should be objective and uniform, based on genetic distance or times of divergence. All taxonomists agree now that red-eyed and white-eyed vireos belong together in the genus Vireo, willow warblers and chiffchaffs in the genus Phylloscopus, the various species of gibbons in the genus Hylobates. Yet the members of each of these pairs of species are genetically more distant from each other than are humans from the other two chimpanzees, and diverged longer ago. On this basis, then, humans do not constitute a distinct family, nor even a distinct genus, but belong in the same genus as common and pygmy chimps. Since our genus name Homo was proposed first, it takes priority, by the rules of zoological nomenclature, over the genus name Pan coined for the 'other' chimps. Thus, there are not one but three species of genus Homo on Earth today: the common chimpanzee, Homo troglodytes; the pygmy chimpanzee, Homo paniscus; and the third chimpanzee or human chimpanzee, Homo sapiens. Since the gorilla is only slightly more distinct, it has almost equal right to be considered a fourth species of Homo.
Even taxonomists espousing cladistics are anthropocentric, and the lumping of humans and chimps into the same genus will undoubtedly be a bitter pill for them to swallow. There is no doubt, however, that whenever chimpanzees learn cladistics, or whenever taxonomists from outer space visit Earth to inventory its inhabitants, they will unhesitatingly adopt the new classification.
Which particular genes are the ones that differ between humans and chimps? Before we can consider this question, we need first to understand what it is that DNA, our genetic material, does.
Much or most of our DNA has no function and may just constitute 'molecular junk': that is, DNA molecules that have become duplicated or have lost former functions, and that natural selection has not eliminated from us because they do us no harm. Of our DNA that does have known functions, the main ones have to do with the long chains of amino acids called proteins. Certain proteins make up much of our body's structure (such as the proteins keratin, of hair, or collagen, of connective tissue), while other proteins, termed enzymes, synthesize and break down most of our body's remaining molecules. The sequences of the component small molecules (nucleotide bases) in DNA specify the sequence of amino acids in our proteins. Other parts of our functional DNA regulate protein synthesis. Those of our observable features that are easiest to understand genetically are ones arising from single proteins and single genes. For instance, our blood's oxygen-carrying protein haemoglobin, already mentioned, consists of two amino acid chains, each specified by a single chunk of DNA (a single 'gene'). These two genes have no observable \ effects except through specifying the structure of haemoglobin, which is confined to our red blood cells. Conversely, haemoglobin's structure is totally specified by those genes. What you eat or how much you exercise may affect how much haemoglobin you make, but not the details of its structure.